# Getting Started

- [Hardware requirements](/getting-started/hardware_requirements.md): This page describes the hardware you ought to have to run BakingTray using ScanImage.
- [Known issues](/getting-started/known-issues.md)
- [Initial Installation](/getting-started/initial-installation.md)
- [Software installation](/getting-started/initial-installation/installing_software.md): Setting up the acquisition PC and installing required software and drivers.
- [Setting up ScanImage](/getting-started/initial-installation/setting-up-scanimage.md): Basic set up of ScanImage for use with BakingTray
- [Hardware setup](/getting-started/hardware-setup.md)
- [Motor Setup](/getting-started/hardware-setup/motor-setup.md)
- [PI stage setup](/getting-started/hardware-setup/motor-setup/pi-stage-setup.md)
- [Calibrating a linear actuator](/getting-started/hardware-setup/motor-setup/calibrating_actuator_mm.md): Calibrating a linear actuator
- [Verifying stage motions](/getting-started/hardware-setup/motor-setup/verifying-stage-motions.md)
- [Setting up a VT1000 vibratome](/getting-started/hardware-setup/setting_up_vt1000.md)
- [Setting up the laser](/getting-started/hardware-setup/laser_setup.md)
- [Finishing the install](/getting-started/finishing-the-install.md)
- [Check the noise on your amplifiers](/getting-started/finishing-the-install/exploring-amplifier-noise-and-bias-in-scanimage.md)
- [Starting BakingTray](/getting-started/finishing-the-install/starting-bakingtray-for-the-first-time.md): Starting BakingTray for the first time
- [Settings Files](/getting-started/finishing-the-install/the-settings-files.md)
- [Calibration](/getting-started/finishing-the-install/calibration.md)
- [Basic calibrating procedures](/getting-started/finishing-the-install/calibration/basic-calibrating-procedures.md)
- [Calibrating image size](/getting-started/finishing-the-install/calibration/calibrating-the-number-of-microns-per-pixel-with-scanimage.md)
- [Achieving high stitching accuracy](/getting-started/finishing-the-install/calibration/achieving-high-stitching-accuracy.md)
- [Fine-tuning positioning accuracy](/getting-started/finishing-the-install/calibration/fine-tuning-positioning-accuracy.md)
- [Stitching tweak walkthrough](/getting-started/finishing-the-install/calibration/example_stitching_correction_walkthrough.md): Tweaking BakingTray and StitchIt for high stitching accuracy
- [Stitching data](/getting-started/stitching-data.md)