> For the complete documentation index, see [llms.txt](https://bakingtray.mouse.vision/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://bakingtray.mouse.vision/getting-started/finishing-the-install.md).

# Finishing the install

- [Check the noise on your amplifiers](https://bakingtray.mouse.vision/getting-started/finishing-the-install/exploring-amplifier-noise-and-bias-in-scanimage.md)
- [Starting BakingTray](https://bakingtray.mouse.vision/getting-started/finishing-the-install/starting-bakingtray-for-the-first-time.md): Starting BakingTray for the first time
- [Settings Files](https://bakingtray.mouse.vision/getting-started/finishing-the-install/the-settings-files.md)
- [Calibration](https://bakingtray.mouse.vision/getting-started/finishing-the-install/calibration.md)
- [Basic calibrating procedures](https://bakingtray.mouse.vision/getting-started/finishing-the-install/calibration/basic-calibrating-procedures.md)
- [Calibrating image size](https://bakingtray.mouse.vision/getting-started/finishing-the-install/calibration/calibrating-the-number-of-microns-per-pixel-with-scanimage.md)
- [Achieving high stitching accuracy](https://bakingtray.mouse.vision/getting-started/finishing-the-install/calibration/achieving-high-stitching-accuracy.md)
- [Fine-tuning positioning accuracy](https://bakingtray.mouse.vision/getting-started/finishing-the-install/calibration/fine-tuning-positioning-accuracy.md)
- [Stitching tweak walkthrough](https://bakingtray.mouse.vision/getting-started/finishing-the-install/calibration/example_stitching_correction_walkthrough.md): Tweaking BakingTray and StitchIt for high stitching accuracy