# Users

- [Introduction](/users/introduction.md)
- [Sample preparation](/users/sample_prep.md)
- [User Guide](/users/user_guide.md)
- [Starting BakingTray](/users/user_guide/step_01_starting-bakingtray.md)
- [Step 0: Loading the sample](/users/user_guide/step_00_sample_into_microscope.md)
- [Step 1: Setting imaging parameters](/users/user_guide/step_02_setting-up-imaging-parameters.md)
- [Step 2: Preparing the sample](/users/user_guide/step_03_preparing-the-sample.md)
- [Step 3: Selecting the imaging area](/users/user_guide/step_04_selecting-the-imaging-area.md)
- [Step 4: Starting the acquisition](/users/user_guide/step_05_starting-the-acquisition.md)
- [Step 5: Concluding the acquisition](/users/user_guide/step_06_concluding-or-restarting-the-acquisition.md)
- [Setting up checklist](/users/user_guide/checklist.md)
- [Resuming an acquisition](/users/user_guide/acq_resume.md)
- [Manual ROI acquisitions](/users/user_guide/manual_roi_acquisitions.md)
- [Excitation choices](/users/choosing-wavelength.md)
- [Choosing imaging settings](/users/choosing-imaging-settings.md)
- [Troubleshooting](/users/troubleshooting.md)
- [Hardware problems](/users/troubleshooting/hardware-problems.md)
- [Computer problems](/users/troubleshooting/computer-problems.md)
- [Cutting problems](/users/troubleshooting/cutting-problems.md)
- [Imaging problems](/users/troubleshooting/acquisition-problems-and-solutions.md)
- [Data structure](/users/data-structure.md)
- [autoROI](/users/autoroi_setting_up.md)